PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G039900.2.p
Common NameSb02g003433, SORBIDRAFT_02g003433
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 937aa    MW: 101954 Da    PI: 5.855
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G039900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26079.55.6e-25151121100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aC++lrr+C+++Cv+apyf ae+   fa+vh +FGasnv+k+l+++  +e+r  a+++lv eA+ar+ dP  G v+ ++ lq+  +
  Sobic.002G039900.2.p  15 PCGACRTLRRRCVPGCVFAPYFTAED---FAAVHGVFGASNVSKMLERIeLPEQRAVAAATLVEEARARQLDPTFGRVSYLRILQEVND 100
                           7*********************9987...********************56788*********************************** PP

                DUF260  89 qlkaelallkee 100
                           ++++++++++ee
  Sobic.002G039900.2.p 101 KARTQVDEAREE 112
                           ****99999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.55214113IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-2615110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 937 aa     Download sequence    Send to blast
MPDDEQAVAV AVAAPCGACR TLRRRCVPGC VFAPYFTAED FAAVHGVFGA SNVSKMLERI  60
ELPEQRAVAA ATLVEEARAR QLDPTFGRVS YLRILQEVND KARTQVDEAR EEIAREFGAL  120
AASQPVDVAA AAPAARVEAR AQVDAALKHA REQDARLIGV RMANEARWRE LHEPATGTVT  180
GKHAGNGKGI DVVKRHREPT LSEQTMLMLR AAKQRISRTT GFPDEGERQQ MAVVDAEREK  240
ALFMRQAAPA KQHDYHHHHL GAQHGDTEPP RIPEVYGNGQ LTASADASRE EAMRSVQAPA  300
AAPPQQLDSA GQHAGTGQPR HAGDAAAGRT PGQGSTSVLL EAMMQLAGAT GEQQHLVAQH  360
AENEHAVALG HGHPVDISQE MMQLQELLDM AELARNEQMM KNDVMTEMGQ WDAAAGVARE  420
PDVMTMTQQM PANAWQHRDP APQYAGMCDG RPLEMPQQME EASTAELAKT TTGNMSQQFA  480
WAQQHHDPAA AQHASPCHHQ MAAASASQVA SEQDMLLLLQ QHQVGAAELP STGGARQFDN  540
LAAQYGDTEL TLGYGHPDMH QQVVAAGQVA RVQDMNSPQL AARAHQHHAQ NGLDIALGNG  600
HPGDAETQAM LQELAAILEL ADERAMIRKQ WEQDARTMMT QQDPDAAWLQ EMLGQKQIEK  660
ASRPDGPDLD KRLEIMSRQA EARHAQKELG ITPDGSAQGI LQAQELSAMA EMQRKREMVM  720
RQFVAAERAR EQKLEMLMRQ FVAAARAREQ ELITQQAAAA QQQPVAQQYS ETELDVSLGQ  780
GHGHPYWHQP TVQEMVQKKQ LPTVQQMLEE EQLAEAVGFG RHQPDTTLVQ QVPAYANGEH  840
GGGAGATMAF LSPGYAKAAP FRVDQQLQTN GHQMDSSLPP MPPSLSQLHA QASHQQRTDG  900
GGQGLSSDLA AYLHYESLSR HGTAGFNRGS EGPERR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0373112e-71BT037311.1 Zea mays full-length cDNA clone ZM_BFb0162E24 mRNA, complete cds.
GenBankKJ7282672e-71KJ728267.1 Zea mays clone pUT6544 LOB transcription factor (LOB2) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461486.10.0hypothetical protein SORBIDRAFT_02g003433, partial
TrEMBLC5XA730.0C5XA73_SORBI; Putative uncharacterized protein Sb02g003433 (Fragment)
STRINGSb02g003433.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16457913
Representative plantOGRP1954922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.43e-25LBD family protein